PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0013s0230.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 686aa    MW: 76032 Da    PI: 6.9787
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0013s0230.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3727.5e-23116216198
                             EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                             f+k+lt sd++++g +++ +k+a+e+     +++ + +++l  +d++g  W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF
  SapurV1A.0013s0230.3.p 116 FCKILTASDTSTHGGFSVLRKHATEClppldMSQATPTQELAARDLHGYDWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVF 202
                             99****************************9555566679*********************************************** PP

                             EE-SSSEE..EEEEE- CS
                      B3  83 kldgrsefelvvkvfr 98 
                                + +++el+v+++r
  SapurV1A.0013s0230.3.p 203 L--RGDNGELRVGLRR 216
                             *..3489999**9997 PP

2Auxin_resp94.22e-31242321183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             a+ha+ t+s F v+Y+Pr+   ++++ ++k+++a+k+ +svGmRfkm+fe+eds+err++Gt+vgv d++p +W++S WrsLk
  SapurV1A.0013s0230.3.p 242 ASHAVLTQSLFLVYYKPRT--NQYIIGLNKYLEAVKNGFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSP-EWSGSIWRSLK 321
                             68999*************6..99************************************************.*********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-40107245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-39109231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-18114216No hitNo description
SMARTSM010193.3E-21116218IPR003340B3 DNA binding domain
PfamPF023624.9E-21116216IPR003340B3 DNA binding domain
PROSITE profilePS5086311.885116218IPR003340B3 DNA binding domain
PfamPF065072.2E-29242321IPR010525Auxin response factor
PfamPF023092.2E-11545657IPR033389AUX/IAA domain
SuperFamilySSF542776.34E-11564645No hitNo description
PROSITE profilePS5174524.801570650IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MAQTERAGDD LYTELWKACA GPLVDVPKAG ERVFYFPQGH MEQLEASTTQ ELNQQIPRFN  60
LPSKILCRVI NIQLLAEQDT DEVYAQITLQ PEADQTKPTS PEPCPPEPAK QTVHSFCKIL  120
TASDTSTHGG FSVLRKHATE CLPPLDMSQA TPTQELAARD LHGYDWRFKH IFRGQPRRHL  180
LTTGWSTFVT SKRLVAGDSF VFLRGDNGEL RVGLRRLARQ QSSIPSSVIS SQSMHLGVLA  240
TASHAVLTQS LFLVYYKPRT NQYIIGLNKY LEAVKNGFSV GMRFKMRFEG EDSPERRFTG  300
TIVGVGDFSP EWSGSIWRSL KIQWDEPATI QRPERVSPWD IEPFAAPSSP NLTQQVVKSK  360
RPRPVDIPAS AASAFWYHGP TQSRELVQRG SIIEAQSSES HIWSMRQKEV DSSLNNSGGC  420
NSRARPEGIW LPSSHMNVSL NFFPDPAGDN KCAKTQSIIS GFASSISSMQ SDGLINEQVE  480
KGRKFENSVG CRLFGIDLTS NSGITAAPEK EPAYPIVDYN EAKGLFPAAG EAEKAQTMEF  540
SMSSKQQKQV VPDALAKESQ SKQGSTTSTR TRTKVQMQGV AVGRALDLTV LKGYKDLIIE  600
LGKMFEIGEL STREKWTVVF TDDEGDMMLV GDDPWPEFCK MVKKIYIYSS EEVKKMSARC  660
KLPASSFEGE GTAVSMESEH KSDAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldw_B1e-174934417355Auxin response factor 1
4ldw_A1e-174934417355Auxin response factor 1
4ldv_A1e-174934417355Auxin response factor 1
4ldx_B1e-174934417355Auxin response factor 1
4ldx_A1e-174934417355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359363KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT1646980.0KT164698.1 Populus tomentosa clone Potom.002G07206 auxin response factor 11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375371.10.0hypothetical protein POPTR_0014s09560g
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLU5FPS30.0U5FPS3_POPTR; Auxin response factor
STRINGPOPTR_0014s09560.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18